Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'
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2014
Authors
Kube, MichaelSiewert, Christin
Migdoll, Alexander M.
Duduk, Bojan
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Holz, Sabine
Rabus, Ralf
Seemueller, Erich
Mitrović, Jelena
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Mueller, Ines
Buettner, Carmen
Reinhardt, Richard
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Article (Published version)
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Analysis of the completely determined genomes of the plant-derived Acholeplasma brassicae strain O502 and A. palmae strain J233 revealed that the circular chromosomes are 1,877,792 and 1,554,229 bp in size, have a G + C content of 36 and 29%, and encode 1,690 and 1,439 proteins, respectively. Comparative analysis of these sequences and previously published genomes of A. laidlawii strain PG-8, 'Candidatus Phytoplasma asteris' strains, 'Ca. P. australiense' and 'Ca. P. mali' show a limited shared basic genetic repertoire. The acholeplasma genomes are characterized by a low number of rearrangements, duplication and integration events. Exceptions are the unusual duplication of rRNA operons in A. brassicae and an independently introduced second gene for a single-stranded binding protein in both genera. In contrast to phytoplasmas, the acholeplasma genomes differ by encoding the cell division protein FtsZ, a wide variety of ABC transporters, the F0F1 ATP synthase, the Rnf-complex, SecG of th...e Sec -dependent secretion system, a richly equipped repertoire for carbohydrate metabolism, fatty acid, isoprenoid and partial amino acid metabolism. Conserved metabolic proteins encoded in phytoplasma genomes such as the malate dehydrogenase SfcA, several transporters and proteins involved in host-interaction, and virulence-associated effectors were not predicted for the acholeplasmas. (C) 2013 S. Karger AG, Basel
Keywords:
Complete genomes / Candidatus phytoplasma / Acholeplasma palmae / Acholeplasma brassicaeSource:
Journal of Molecular Microbiology and Biotechnology, 2014, 24, 1, 19-36Publisher:
- KARGER, BASEL
Projects:
- German Research Foundation (DFG) [KU 2679/2-1, BU 890/211]
- German Academic Exchange Service (DAAD) [56266384]
- Studies on plant pathogens, arthropods, weeds, and pesticides with a view to developing the methods of biorational plant protection and safe food production (RS-MESTD-Technological Development (TD or TR)-31043)
- Max Planck Society
- [COST-FA0807-STSM-180111-006678]
DOI: 10.1159/000354322
ISSN: 1464-1801
PubMed: 24158107
WoS: 000329921200003
Scopus: 2-s2.0-84885999990
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Institution
Institut za pesticide i zaštitu životne sredineTY - JOUR AU - Kube, Michael AU - Siewert, Christin AU - Migdoll, Alexander M. AU - Duduk, Bojan AU - Holz, Sabine AU - Rabus, Ralf AU - Seemueller, Erich AU - Mitrović, Jelena AU - Mueller, Ines AU - Buettner, Carmen AU - Reinhardt, Richard PY - 2014 UR - https://ripest.pesting.org.rs/handle/123456789/296 AB - Analysis of the completely determined genomes of the plant-derived Acholeplasma brassicae strain O502 and A. palmae strain J233 revealed that the circular chromosomes are 1,877,792 and 1,554,229 bp in size, have a G + C content of 36 and 29%, and encode 1,690 and 1,439 proteins, respectively. Comparative analysis of these sequences and previously published genomes of A. laidlawii strain PG-8, 'Candidatus Phytoplasma asteris' strains, 'Ca. P. australiense' and 'Ca. P. mali' show a limited shared basic genetic repertoire. The acholeplasma genomes are characterized by a low number of rearrangements, duplication and integration events. Exceptions are the unusual duplication of rRNA operons in A. brassicae and an independently introduced second gene for a single-stranded binding protein in both genera. In contrast to phytoplasmas, the acholeplasma genomes differ by encoding the cell division protein FtsZ, a wide variety of ABC transporters, the F0F1 ATP synthase, the Rnf-complex, SecG of the Sec -dependent secretion system, a richly equipped repertoire for carbohydrate metabolism, fatty acid, isoprenoid and partial amino acid metabolism. Conserved metabolic proteins encoded in phytoplasma genomes such as the malate dehydrogenase SfcA, several transporters and proteins involved in host-interaction, and virulence-associated effectors were not predicted for the acholeplasmas. (C) 2013 S. Karger AG, Basel PB - KARGER, BASEL T2 - Journal of Molecular Microbiology and Biotechnology T1 - Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma' EP - 36 IS - 1 SP - 19 VL - 24 DO - 10.1159/000354322 UR - conv_428 ER -
@article{ author = "Kube, Michael and Siewert, Christin and Migdoll, Alexander M. and Duduk, Bojan and Holz, Sabine and Rabus, Ralf and Seemueller, Erich and Mitrović, Jelena and Mueller, Ines and Buettner, Carmen and Reinhardt, Richard", year = "2014", abstract = "Analysis of the completely determined genomes of the plant-derived Acholeplasma brassicae strain O502 and A. palmae strain J233 revealed that the circular chromosomes are 1,877,792 and 1,554,229 bp in size, have a G + C content of 36 and 29%, and encode 1,690 and 1,439 proteins, respectively. Comparative analysis of these sequences and previously published genomes of A. laidlawii strain PG-8, 'Candidatus Phytoplasma asteris' strains, 'Ca. P. australiense' and 'Ca. P. mali' show a limited shared basic genetic repertoire. The acholeplasma genomes are characterized by a low number of rearrangements, duplication and integration events. Exceptions are the unusual duplication of rRNA operons in A. brassicae and an independently introduced second gene for a single-stranded binding protein in both genera. In contrast to phytoplasmas, the acholeplasma genomes differ by encoding the cell division protein FtsZ, a wide variety of ABC transporters, the F0F1 ATP synthase, the Rnf-complex, SecG of the Sec -dependent secretion system, a richly equipped repertoire for carbohydrate metabolism, fatty acid, isoprenoid and partial amino acid metabolism. Conserved metabolic proteins encoded in phytoplasma genomes such as the malate dehydrogenase SfcA, several transporters and proteins involved in host-interaction, and virulence-associated effectors were not predicted for the acholeplasmas. (C) 2013 S. Karger AG, Basel", publisher = "KARGER, BASEL", journal = "Journal of Molecular Microbiology and Biotechnology", title = "Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'", pages = "36-19", number = "1", volume = "24", doi = "10.1159/000354322", url = "conv_428" }
Kube, M., Siewert, C., Migdoll, A. M., Duduk, B., Holz, S., Rabus, R., Seemueller, E., Mitrović, J., Mueller, I., Buettner, C.,& Reinhardt, R.. (2014). Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'. in Journal of Molecular Microbiology and Biotechnology KARGER, BASEL., 24(1), 19-36. https://doi.org/10.1159/000354322 conv_428
Kube M, Siewert C, Migdoll AM, Duduk B, Holz S, Rabus R, Seemueller E, Mitrović J, Mueller I, Buettner C, Reinhardt R. Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'. in Journal of Molecular Microbiology and Biotechnology. 2014;24(1):19-36. doi:10.1159/000354322 conv_428 .
Kube, Michael, Siewert, Christin, Migdoll, Alexander M., Duduk, Bojan, Holz, Sabine, Rabus, Ralf, Seemueller, Erich, Mitrović, Jelena, Mueller, Ines, Buettner, Carmen, Reinhardt, Richard, "Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'" in Journal of Molecular Microbiology and Biotechnology, 24, no. 1 (2014):19-36, https://doi.org/10.1159/000354322 ., conv_428 .